Qing Wang

Ph.D. Student in Biomedical Informatics

Department of Health Outcomes & Biomedical Informatics, College of Medicine, University of Florida

📧 wang.qing@ufl.edu  ·  ☎️ (+1) 352-256-3237

Qing Wang

About

I am a Ph.D. student in Biomedical Informatics at the University of Florida, co-mentored by Prof. Yijiang Chen and Prof. Qianqian Song in the UF College of Medicine's Emerging Research Scholars in AI (ERS-AI) Ph.D. Program. My research centers on AI for Science — building biomedical foundation models, large language models, and agent / RAG-based systems for drug discovery, single-cell analysis, electronic health records, and medical imaging. This research is currently supported by an NSF ACCESS "Discover" allocation that I lead as Principal Investigator — about 1.5 million ACCESS credits of national HPC/GPU resources, an NSF-estimated value of ≈$321,000.

Before joining UF, I received my B.S. in Internet of Things Engineering from Zhejiang Wanli University (2021), advised by Prof. Jiong Shi, and my M.S. in Computer Science from Zhejiang Normal University (2024) under Prof. Jia Zhu, where — as a member of the Zhejiang Key Laboratory of Intelligent Education Technology and Application — I was also guided by Prof. Changqin Huang and Prof. Ming Li. In summer 2023 I visited Prof. Daniel E. Acuna's lab in the Department of Computer Science at CU Boulder.

Since 2023 I have (co-)authored 20 peer-reviewed papers — including 10 first / co-first-author works — in venues such as Nature Communications, Advanced Science, Briefings in Bioinformatics, Bioinformatics, and Findings of EMNLP, along with 2 preprints under review, and I hold one China patent. I serve as a reviewer for 35+ international journals and conferences (e.g., Medical Image Analysis, Patterns, Genome Biology, npj Precision Oncology, Neural Networks) and as a Program Committee member for ICIBM 2024–2026.

Research Interests

News

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Selected Publications

scDrugMap paper cover
First author · Nature Communications
scDrugMap: Benchmarking Large Foundation Models for Drug Response Prediction
Qing Wang, Yining Pan, Minghao Zhou, Zijia Tang, Yanfei Wang, Guangyu Wang, Qianqian Song
Nature Communications, 2025
DrugFormer paper cover
Co-first author · Advanced Science
DrugFormer: Graph-Enhanced Language Model to Predict Drug Sensitivity
Xiaona Liu, Qing Wang, Minghao Zhou, Yanfei Wang, Xuefeng Wang, Xiaobo Zhou, Qianqian Song
Advanced Science, 2024
AntiFormer paper cover
First author · Briefings in Bioinformatics
AntiFormer: Graph-Enhanced Large Language Model for Binding Affinity Prediction
Qing Wang, Yuzhou Feng, Yanfei Wang, Bo Li, Jianguo Wen, Xiaobo Zhou, Qianqian Song
Briefings in Bioinformatics, 2024
HECLIP paper cover
First author · Bioinformatics
HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics Profiles
Qing Wang, Wen-jie Chen, Jing Su, Guangyu Wang, Qianqian Song
Bioinformatics, 2025

See all publications →

Open Source

Founder & maintainer · 100+ GitHub stars
An agentic RAG system for drug intelligence — drug-target interactions, adverse drug reactions, drug-drug interactions, pharmacogenomics, and repurposing — built on LangGraph with evidence-grounded, source-attributed answers.

Education

University of Florida
Ph.D. in Biomedical Informatics (ERS-AI Program) · GPA 3.55/4
Aug 2025 – Present
Advisors: Yijiang Chen, Qianqian Song
University of Florida
M.S. program in Biomedical Informatics (transferred to Ph.D.)
Aug 2024 – May 2025
Advisor: Qianqian Song
University of Colorado Boulder
Visiting Student, Department of Computer Science
Jun 2023 – Sep 2023
Advisor: Daniel E. Acuna
Zhejiang Normal University
M.S. in Computer Science · GPA 3.79/4 (WES)
Sep 2021 – Jun 2024
Advisor: Jia Zhu
Zhejiang Wanli University
B.S. in Internet of Things Engineering · GPA 3.31/4 (WES)
Sep 2017 – Jun 2021
Advisor: Jiong Shi

Research Experience

Graduate Research Assistant — Song Lab
Dept. of Health Outcomes & Biomedical Informatics, University of Florida
Aug 2024 – Present
AI for drug discovery, single-cell foundation models, and biomedical LLM / agent systems.
Visiting Student — Acuna Lab
Dept. of Computer Science, University of Colorado Boulder
Jun 2023 – Sep 2023
Research Assistant — Intelligent Education Technology Lab
Zhejiang Key Laboratory of Intelligent Education Technology and Application, Zhejiang Normal University · Advisor: Prof. Jia Zhu
Sep 2021 – Jun 2024
Natural language processing, knowledge graphs, and AI for Education (AI4EDU).
Undergraduate Research — Internet of Things
Zhejiang Wanli University · Advisor: Prof. Jiong Shi
Sep 2017 – Jun 2021
IoT systems for medical cold-chain transportation and logistics.

Teaching

Teaching Assistant — CAI5720: Fundamentals of AI in Medicine I
College of Medicine, University of Florida
Fall 2026
Guest Lecturer — GMS6804: Translational Bioinformatics
Dept. of Health Outcomes & Biomedical Informatics, University of Florida
Spring 2026
Topic: "AI-Driven Paradigm for Single-Cell Drug Resistance Prediction and Evaluation"
Teaching Assistant — Object-Oriented Analysis and Design
Zhejiang Normal University
Fall 2023

Professional Service

Honors & Awards