Qing Wang

Ph.D. Student in Biomedical Informatics

Department of Health Outcomes & Biomedical Informatics, College of Medicine, University of Florida

📧 wang.qing@ufl.edu  ·  ☎️ (+1) 352-256-3237

Qing Wang

About

I am a Ph.D. student in Biomedical Informatics at the University of Florida, advised by Prof. Qianqian Song. My research centers on AI for Science — building biomedical foundation models, large language models, and agent / RAG-based systems for drug discovery, single-cell analysis, electronic health records, and medical imaging. This research is currently supported by an NSF ACCESS "Discover" allocation (≈11,000 GPU-hours of national HPC/GPU resources) that I lead as Principal Investigator.

Before joining UF, I received my B.S. in Internet of Things Engineering from Zhejiang Wanli University (2021), advised by Prof. Jiong Shi, and my M.S. in Computer Science from Zhejiang Normal University (2024) under Prof. Jia Zhu, where — as a member of the Zhejiang Key Laboratory of Intelligent Education Technology and Application — I was also guided by Prof. Changqin Huang and Prof. Ming Li. In summer 2023 I visited Prof. Daniel E. Acuna's lab in the Department of Computer Science at CU Boulder.

Since 2022 I have (co-)authored 17 papers — including 7 first / co-first-author works — in venues such as Nature Communications, Advanced Science, Briefings in Bioinformatics, and Bioinformatics, and I hold one China patent. I serve as a reviewer for 30+ international journals and conferences (e.g., Medical Image Analysis, Genome Biology, npj Precision Oncology, Neural Networks) and as a Program Committee member for ICIBM 2024–2026.

Research Interests

News

Selected Publications

scDrugMap paper cover
First author · Nature Communications
scDrugMap: Benchmarking Large Foundation Models for Drug Response Prediction
Qing Wang, Yining Pan, Minghao Zhou, Zijia Tang, Yanfei Wang, Guangyu Wang, Qianqian Song
Nature Communications, 2025
DrugFormer paper cover
Co-first author · Advanced Science
DrugFormer: Graph-Enhanced Language Model to Predict Drug Sensitivity
Xiaona Liu, Qing Wang, Minghao Zhou, Yanfei Wang, Xuefeng Wang, Xiaobo Zhou, Qianqian Song
Advanced Science, 2024
AntiFormer paper cover
First author · Briefings in Bioinformatics
AntiFormer: Graph-Enhanced Large Language Model for Binding Affinity Prediction
Qing Wang, Yuzhou Feng, Yanfei Wang, Bo Li, Jianguo Wen, Xiaobo Zhou, Qianqian Song
Briefings in Bioinformatics, 2024
HECLIP paper cover
First author · Bioinformatics
HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics Profiles
Qing Wang, Wen-jie Chen, Jing Su, Guangyu Wang, Qianqian Song
Bioinformatics, 2025

See all publications →

Open Source

Founder & maintainer · 130+ GitHub stars
An agentic RAG system for drug intelligence — drug-target interactions, adverse drug reactions, drug-drug interactions, pharmacogenomics, and repurposing — built on LangGraph with evidence-grounded, source-attributed answers.

Education

University of Florida
Ph.D. in Biomedical Informatics (Medical Sciences) · GPA 3.51/4
Aug 2025 – Present
University of Florida
M.S. program in Medical Sciences (transferred to Ph.D.)
Aug 2024 – May 2025
University of Colorado Boulder
Visiting Student, Department of Computer Science
Jun 2023 – Sep 2023
Zhejiang Normal University
M.S. in Computer Science · GPA 3.79/4 (WES)
Sep 2021 – Jun 2024
Zhejiang Wanli University
B.S. in Internet of Things Engineering · GPA 3.31/4 (WES)
Sep 2017 – Jun 2021

Research Experience

Graduate Research Assistant — Song Lab
Dept. of Health Outcomes & Biomedical Informatics, University of Florida
Aug 2024 – Present
AI for drug discovery, single-cell foundation models, and biomedical LLM / agent systems.
Visiting Student — Acuna Lab
Dept. of Computer Science, University of Colorado Boulder
Jun 2023 – Sep 2023
Research Assistant — Intelligent Education Technology Lab
Zhejiang Key Laboratory of Intelligent Education Technology and Application, Zhejiang Normal University · Advisor: Prof. Jia Zhu
Sep 2021 – Jun 2024
Natural language processing, knowledge graphs, and AI for Education (AI4EDU).
Undergraduate Research — Internet of Things
Zhejiang Wanli University · Advisor: Prof. Jiong Shi
Sep 2017 – Jun 2021
IoT systems for medical cold-chain transportation and logistics.

Professional Service

Honors & Awards