Publications

First / co-first-author works are marked; PDF, DOI, and open-source code links are provided where available.

Journal Articles

14
  1. scDeepAPA: A Deep Learning Framework for Single-Cell Alternative Polyadenylation IdentificationCo-first author
    Jialu Liang, Qing Wang, Sen Guo, Wei Zhang, Mingyi Xie, Qianqian Song
    Briefings in Bioinformatics, 2026 · JCR-Q1, IF 7.7
    PDF DOI
  2. KE-LPG: Toward Semantic Refinement for Lesson Plan Generation
    Hanghui Guo, Jia Zhu, Changfan Pan, Qing Wang, Cong Zhou, Chaojun Meng
    Arabian Journal for Science and Engineering, 2026 · JCR-Q2, IF 3.1
    PDF
  3. PhenoProfiler: Advancing Phenotypic Learning for Image-based Drug Discovery
    Bo Li, Bob Zhang, Chengyang Zhang, Minghao Zhou, Weiliang Huang, Shihang Wang, Qing Wang, Mengran Li, Yong Zhang, Qianqian Song
    Nature Communications, 2025 · JCR-Q1, IF 18.1
    PDF Code
  4. scDrugMap: Benchmarking Large Foundation Models for Drug Response PredictionFirst author
    Qing Wang, Yining Pan, Minghao Zhou, Zijia Tang, Yanfei Wang, Guangyu Wang, Qianqian Song
    Nature Communications, 2025 · JCR-Q1, IF 18.1
    PDF DOI Code Web
  5. Integration of Genetic and Imaging Data for Alzheimer's Disease Diagnosis and Interpretation
    Yanfei Wang, Qing Wang, Minghao Zhou, Jialu Liang, Lei You, Breton Asken, Xiaobo Zhou, Qianqian Song
    Advanced Science, 2025 · JCR-Q1, IF 14.1
    PDF
  6. HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics ProfilesFirst author
    Qing Wang, Wen-jie Chen, Jing Su, Guangyu Wang, Qianqian Song
    Bioinformatics, 2025 · JCR-Q1, IF 5.5
    PDF DOI Code
  7. Heterogeneous Collaborative Filtering Contrastive Learning for Social Recommendation
    Chaojun Meng, Changfan Pan, Hongji Shu, Qing Wang, Hanghui Guo, Jia Zhu
    Applied Soft Computing, 2025 · JCR-Q1, IF 7.8
    PDF
  8. Research on the Impact of Pointing Gestures Based on Computer Vision Technology on Classroom Concentration
    Jianyang Shi, Zhangze Chen, Jia Zhu, Jian Zhou, Qing Wang, Xiaodong Ma
    Neural Computing and Applications, 2025 · JCR-Q1, IF 4.5
    PDF
  9. Gene Expression Prediction from Histology Images via Hypergraph Neural Networks
    Bo Li, Yong Zhang, Qing Wang, Chengyang Zhang, Mengran Li, Guangyu Wang, Qianqian Song
    Briefings in Bioinformatics, 2024 · JCR-Q1, IF 7.7
    PDF Code
  10. DrugFormer: Graph-Enhanced Language Model to Predict Drug SensitivityCo-first author
    Xiaona Liu, Qing Wang, Minghao Zhou, Yanfei Wang, Xuefeng Wang, Xiaobo Zhou, Qianqian Song
    Advanced Science, 2024 · JCR-Q1, IF 14.1
    PDF DOI Code
  11. AntiFormer: Graph-Enhanced Large Language Model for Binding Affinity PredictionFirst author
    Qing Wang, Yuzhou Feng, Yanfei Wang, Bo Li, Jianguo Wen, Xiaobo Zhou, Qianqian Song
    Briefings in Bioinformatics, 2024 · JCR-Q1, IF 7.7
    PDF DOI Code
  12. Self-Supervised Hypergraph Learning for Enhanced Multimodal Representation
    Hongji Shu, Chaojun Meng, Pasquale De Meo, Qing Wang, Jia Zhu
    IEEE Access, 2024 · JCR-Q2, IF 4.2
    PDF
  13. GUDN: A Novel Guide Network with Label Reinforcement Strategy for Extreme Multi-label Text ClassificationFirst author
    Qing Wang, Jia Zhu, Hongji Shu, Kwame Omono Asamoah, Jianyang Shi, Cong Zhou
    Journal of King Saud University – Computer and Information Sciences, 2023 · JCR-Q1, IF 6.1
    PDF
  14. A Blockchain-Based Crowdsourcing Loan Platform for Funding Higher Education in Developing Countries
    Kwame Omono Asamoah, Adjei Peter Darko, Collins Opoku Antwi, Seth Larweh Kodjiku, Esther Stacy E. B. Aggrey, Qing Wang, Jia Zhu
    IEEE Access, 2023 · JCR-Q2, IF 4.2
    PDF

Conference Papers

6
  1. DrugClaw and DrugAudit: A Primary-Source-Grounded Agent and Authority-Aware Benchmark for Drug-Information Question AnsweringFirst author
    Qing Wang, Bo Li, Jialu Liang, Daling Shi, Bob Zhang, Qianqian Song
    Findings of the Association for Computational Linguistics: EMNLP 2026
    arXiv Code
  2. UniD³: Open Knowledge Graphs and QA Benchmarks for Drug–Disease Discovery and ReasoningFirst author
    Qing Wang, Tianshi Liu, Minghao Zhou, Jialu Liang, Sen Guo, Jing Su, Qianqian Song
    Findings of the Association for Computational Linguistics: EMNLP 2026
    arXiv
  3. Stable Attribution with Local Surrogate Model
    Changfan Pan, Qing Wang, Jia Zhu, Xinran Cao, Hanghui Guo, Changqin Huang
    CCF Conf. on Computer Supported Cooperative Work and Social Computing (ChineseCSCW), Springer, 2024
  4. Dual Trustworthy Mechanism for Illness Classification with Multi-modality DataFirst author
    Qing Wang, Jia Zhu, Changfan Pan, Jianyang Shi, Chaojun Meng, Hanghui Guo
    IEEE International Conference on Data Mining Workshops (ICDMW), 2023
    PDF DOI
  5. Enhancing Question Generation with Syntactic Details and Multi-Level Attention Mechanism
    Cong Zhou, Jia Zhu, Qing Wang, Chaojun Meng, Changfan Pan, Jianyang Shi
    7th Asian Conference on Artificial Intelligence Technology (ACAIT), IEEE, 2023
    PDF
  6. Automatic Teaching Plan Grading with Distilled Multimodal Education KnowledgeFirst author
    Qing Wang, Hanwen Zhu, Yilong Ji, Jianyang Shi, Xiaodong Ma, Jia Zhu
    International Conference on Computer Science and Educational Informatization (ICCSEI), Springer, 2023

Preprints

2
  1. MVCBench: A Multimodal Benchmark for Drug-induced Virtual Cell PhenotypesCo-first author
    Bo Li, Qing Wang, Shihang Wang, Bob Zhang, Yuzhong Peng, Pinxian Zeng, Chengliang Liu, Mengran Li, Ziyang Tang, Xiaojun Yao, Chuxia Deng, Qianqian Song
    bioRxiv 2026.04.22.720110, 2026
    bioRxiv
  2. A Hierarchical Bayesian Framework for Inferring Mitochondrial Clonal Selection from Single-Cell Data
    Aoqi Wang, Yanfei Wang, Xiaona Liu, Qing Wang, Sen Guo, Jianguo Wen, Xiaobo Zhou, Qianqian Song
    Research Square, rs.3.rs-8490828, 2026
    Preprint

Patents

1
  1. Profile Generation Method, System and Medium Based on Guide Network Text Classification
    Changqin Huang, Qing Wang, Jia Zhu, Hongji Shu
    China Patent · CN114780723B (CN202210367239.7)

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